Refactor QS408M and PDSF File Handlers

- Updated Detail class to include JsonSourceGenerationOptions and JsonSerializable attributes for source generation. - Modified ProcessData class to utilize source generation context for Description deserialization. - Renamed RowSourceGenerationContext to QS408MRowSourceGenerationContext for clarity. - Updated Run class to use QS408MRunSourceGenerationContext for serialization. - Enhanced Description class with source generation attributes. - Refactored FileRead class to use source generation context for Description deserialization. - Added new methods in ProcessDataStandardFormat for JSON element array extraction. - Introduced new PDSF file handler classes: Body, Constant, FileRead, Footer, Header, Row, Run, and Site. - Implemented logic for parsing and handling PDSF data structures. - Added unit tests for PDSF processing to ensure functionality.
2025-09-15 11:37:05 -07:00
parent 515df7ec37
commit d07755c3a0
29 changed files with 869 additions and 204 deletions
--- a/Adaptation/FileHandlers/pdsf/Header.cs
+++ b/Adaptation/FileHandlers/pdsf/Header.cs
@ -0,0 +1,106 @@
+using System;
+using System.Collections.ObjectModel;
+
+namespace Adaptation.FileHandlers.pdsf;
+
+#nullable enable
+
+public class Header
+{
+
+    public Header(string title, string recipe, string dateTime, string @operator, string batch, string cassette, bool usedLast, string wafer)
+    {
+        Title = title;
+        Recipe = recipe;
+        DateTime = dateTime;
+        Operator = @operator;
+        Batch = batch;
+        Cassette = cassette;
+        UsedLast = usedLast;
+        Wafer = wafer;
+    }
+
+    public string Title { get; }
+    public string Recipe { get; }
+    public string DateTime { get; }
+    public string Operator { get; }
+    public string Batch { get; }
+    public string Cassette { get; }
+    public bool UsedLast { get; }
+    public string Wafer { get; }
+
+    internal static Header Get() =>
+        new(string.Empty,
+            string.Empty,
+            string.Empty,
+            string.Empty,
+            string.Empty,
+            string.Empty,
+            false,
+            string.Empty);
+
+    internal static Header? Get(Constant constant, Header lastHeader, string text, int[] i)
+    {
+        Header? result;
+        // occasionally there are multiple blocks of details, get the last one as earlier ones may be aborted runs.
+        int index = text.LastIndexOf(constant.BioRad);
+        if (index > -1)
+            text = text.Substring(index);
+        if (string.IsNullOrEmpty(text))
+            result = null;
+        else
+        {
+            bool usedLast;
+            string recipe;
+            string title = Run.GetBefore(text, i, constant.Recipe);
+            string recipeAndDateTime = Run.GetToEOL(text, i);
+            if (recipeAndDateTime.Length < constant.TwoSpaces.Length)
+                recipe = recipeAndDateTime.Trim();
+            else if (!recipeAndDateTime.Contains(constant.TwoSpaces))
+                recipe = recipeAndDateTime.Substring(0, 25).Trim();
+            else
+                recipe = recipeAndDateTime.Split(new string[] { constant.TwoSpaces }, StringSplitOptions.None)[0].Trim();
+            string dateTime = recipeAndDateTime.Substring(recipe.Length).Trim();
+            if (dateTime.EndsWith(constant.Period))
+                dateTime = dateTime.Remove(dateTime.Length - 1, 1);
+            i[0] = Run.ScanPast(text, i, constant.Operator);
+            string @operator = Run.GetBefore(text, i, constant.Batch);
+            string batch = Run.GetToEOL(text, i);
+            i[0] = Run.ScanPast(text, i, constant.Cassette);
+            if (!text.Contains(constant.Cassette))
+                title = string.Empty;
+            string cassette = Run.GetBefore(text, i, constant.Wafer);
+            if (string.IsNullOrEmpty(batch))
+            {
+                i[0] = 0;
+                i[0] = Run.ScanPast(text, i, constant.Wafer);
+            }
+            string wafer = Run.GetToEOL(text, i);
+            _ = Run.GetToEOL(text, i);
+            _ = Run.GetToEOL(text, i);
+            if (string.IsNullOrEmpty(wafer))
+                throw new Exception(constant.WaferFieldIsMissing);
+            if (!string.IsNullOrEmpty(title))
+                usedLast = false;
+            else
+            {
+                title = lastHeader.Title;
+                recipe = lastHeader.Recipe;
+                @operator = lastHeader.Operator;
+                batch = lastHeader.Batch;
+                cassette = lastHeader.Cassette;
+                usedLast = true;
+            }
+            result = new(title: title,
+                         recipe: recipe,
+                         dateTime: dateTime,
+                         @operator: @operator,
+                         batch: batch,
+                         cassette: cassette,
+                         usedLast: usedLast,
+                         wafer: wafer);
+        }
+        return result;
+    }
+
+}