phares3757/met08thftirqs408m
3
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

CSV like PDSF ready to test

Browse Source
This commit is contained in:
Mike Phares
2025-01-13 12:46:35 -07:00
parent 865357bbc8
commit bc6810cf4f
15 changed files with 379 additions and 231 deletions
Download Patch File Download Diff File Expand all files Collapse all files

205
Adaptation/FileHandlers/QS408M/Run.cs Normal file
View File

@ -0,0 +1,205 @@
using Adaptation.Shared;
using System;
using System.Collections.Generic;
using System.Collections.ObjectModel;
using System.IO;
using System.Text;
using System.Text.Json;
using System.Text.Json.Serialization;
namespace Adaptation.FileHandlers.QS408M;
#nullable enable
internal class Run
{
public Run(Header header, ReadOnlyCollection<Site> sites, Body body, Footer footer)
{
Header = header;
Sites = sites;
Body = body;
Footer = footer;
}
public Header Header { get; }
public ReadOnlyCollection<Site> Sites { get; }
public Body Body { get; }
public Footer Footer { get; }
internal static string GetBefore(string text, int[] i, string search)
{
string str;
string str1;
int num = text.IndexOf(search, i[0]);
if (num <= -1)
{
str = text.Substring(i[0]);
i[0] = text.Length;
str1 = str.Trim();
}
else
{
str = text.Substring(i[0], num - i[0]);
i[0] = num + search.Length;
str1 = str.Trim();
}
return str1;
}
internal static string GetToEOL(string text, int[] i)
{
string result;
if (text.IndexOf("\n", i[0]) > -1)
result = GetBefore(text, i, "\n");
else
result = GetBefore(text, i, Environment.NewLine);
return result;
}
internal static int ScanPast(string text, int[] i, string search)
{
int result;
int num = text.IndexOf(search, i[0]);
if (num <= -1)
result = text.Length;
else
result = num + search.Length;
return result;
}
private static void WriteJson(Logistics logistics, List<FileInfo> fileInfoCollection, Run? result)
{
FileInfo fileInfo = new($"{logistics.ReportFullPath}.json");
string json = JsonSerializer.Serialize(result, RunSourceGenerationContext.Default.Run);
File.WriteAllText(fileInfo.FullName, json);
File.SetLastWriteTime(fileInfo.FullName, logistics.DateTimeFromSequence);
fileInfoCollection.Add(fileInfo);
}
private static ReadOnlyCollection<string> GetLines(JsonElement[]? jsonElements)
{
List<string> results = new();
int columns = 0;
StringBuilder stringBuilder = new();
for (int i = 0; i < jsonElements?.Length;)
{
foreach (JsonProperty jsonProperty in jsonElements[0].EnumerateObject())
{
columns += 1;
_ = stringBuilder.Append('"').Append(jsonProperty.Name).Append('"').Append('\t');
}
break;
}
if (jsonElements?.Length != 0)
_ = stringBuilder.Remove(stringBuilder.Length - 1, 1);
results.Add(stringBuilder.ToString());
for (int i = 0; i < jsonElements?.Length; i++)
{
_ = stringBuilder.Clear();
foreach (JsonProperty jsonProperty in jsonElements[i].EnumerateObject())
{
if (jsonProperty.Value.ValueKind == JsonValueKind.Object)
_ = stringBuilder.Append('\t');
else if (jsonProperty.Value.ValueKind != JsonValueKind.String)
_ = stringBuilder.Append(jsonProperty.Value).Append('\t');
else
_ = stringBuilder.Append('"').Append(jsonProperty.Value).Append('"').Append('\t');
}
_ = stringBuilder.Remove(stringBuilder.Length - 1, 1);
results.Add(stringBuilder.ToString());
}
return results.AsReadOnly();
}
private static ReadOnlyCollection<string> GetLines(JsonElement? jsonElement) =>
jsonElement is null ? new(Array.Empty<string>()) : GetLines(new JsonElement[] { jsonElement.Value });
private static void WriteTabSeparatedValues(Logistics logistics, List<FileInfo> fileInfoCollection, Run run)
{
List<Row> results = new();
Row row;
FileInfo fileInfo = new($"{logistics.ReportFullPath}.tsv");
for (int i = 0; i < run.Sites.Count; i++)
{
row = new(run, i);
results.Add(row);
}
string json = JsonSerializer.Serialize(results);
JsonElement[]? jsonElements = JsonSerializer.Deserialize<JsonElement[]>(json);
ReadOnlyCollection<string> lines = GetLines(jsonElements);
File.WriteAllText(fileInfo.FullName, string.Join(Environment.NewLine, lines));
File.SetLastWriteTime(fileInfo.FullName, logistics.DateTimeFromSequence);
fileInfoCollection.Add(fileInfo);
}
private static void WriteException(Logistics logistics, Exception ex)
{
FileInfo fileInfo = new($"{logistics.ReportFullPath}.{nameof(Exception)}.txt");
File.WriteAllText(fileInfo.FullName, $"{ex.Message}{Environment.NewLine}{ex.StackTrace}");
}
internal static Run? Get(Logistics logistics, List<FileInfo> fileInfoCollection, Header[] lastHeader)
{
Run? result;
int[] i = new int[] { 0 };
string text = File.ReadAllText(logistics.ReportFullPath);
Header? header = Header.Get(lastHeader, text, i);
if (header is null)
result = null;
else
{
ReadOnlyCollection<Site> sites = Site.Get(text, i);
if (sites.Count == 0)
result = null;
else
{
Body? body = Body.Get(text, i);
if (body is null)
result = null;
else
{
Footer? footer = Footer.Get(text, i);
if (footer is null)
result = null;
else
{
result = new(header, sites, body, footer);
WriteJson(logistics, fileInfoCollection, result);
try
{
WriteTabSeparatedValues(logistics, fileInfoCollection, result);
}
catch (Exception ex)
{
WriteException(logistics, ex);
}
}
}
}
}
return result;
}
}
// Bio-Rad QS400MEPI Recipe: EP_8IN9PT Thu Apr 30 11:29:10 1970
// operator: J batch: BIORAD#2
// cassette: wafer: 52-589368-4445
// --------------------------------------------------------------------------------
// position thickness position thickness position thickness
// 1 45.735 2 46.536 3 46.742
// 4 46.015 5 46.648 6 45.366
// 7 46.263 8 46.512 9 46.373
// wafer mean thickness = 46.2433, std. dev = 0.4564 PASS
// ================================================================================
// Radial variation (computation B) PASS:
// thickness -2.7474
[JsonSourceGenerationOptions(WriteIndented = true)]
[JsonSerializable(typeof(Run))]
internal partial class RunSourceGenerationContext : JsonSerializerContext
{
}